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Updated DDF2 Dependencies

Merged Updated DDF2 Dependencies
feature/ddf2 into master
Merged Fabio Roberto Vitello requested to merge feature/ddf2 into master
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ddf2/Dockerfile
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FROM lofarit/base3.10
USER root
RUN apt-get install llvm-7 -y
ENV LLVM_CONFIG=llvm-config-7
ENV PYTHONPATH /opt/lofarsoft/lib/python2.7/site-packages
#------------------------
# Get and install ddf2
#------------------------
USER root
# DDF pipeline
RUN cd /opt && git clone https://github.com/mhardcastle/ddf-pipeline.git
RUN cd /opt/ddf-pipeline && git checkout fdaa5aa
@@ -14,8 +17,8 @@ RUN cd /opt && git clone https://github.com/cyriltasse/SkyModel.git
RUN cd /opt/SkyModel && git checkout 026997f
# killMS
RUN cd /opt && git clone https://github.com/saopicc/killMS.git
RUN cd /opt/killMS && git checkout b9e6ab6 #lofar-stable branch latest commit @ 24 Apr 2020
COPY killMS /opt/killMS
#RUN cd /opt/killMS && python setup.py build
RUN cd /opt/killMS/Predict && make
RUN cd /opt/killMS/Array/Dot && make
RUN cd /opt/killMS/Gridder && make
@@ -27,16 +30,23 @@ RUN cd /opt/DynSpecMS && git checkout 461183f
# DDFacet
COPY DDFacet /opt/DDFacet
RUN cp /opt/ddf-pipeline/misc/setup.cfg /opt/DDFacet/ # Fix compile options
RUN python -m pip install -U pip setuptools wheel
RUN pip install -U pip setuptools wheel
RUN python -m pip install pybind11 future pyregion sshtunnel pymysql psutil
#RUN python -m pip install -U "/opt/DDFacet/[dft-support,moresane-support,testing-requirements,fits-beam-support]"
RUN python -m pip install numpy==1.16.2 bdsf==1.8.15 emcee
RUN python -m pip install astropy_healpix pybind11 future pyregion sshtunnel pymysql psutil
RUN python -m pip install -U "/opt/DDFacet/[dft-support,moresane-support,testing-requirements,fits-beam-support]"
RUN cd /opt/DDFacet && python setup.py build
RUN cd /opt/DDFacet && rm -rf /opt/DDFacet/Dcbuild && python setup.py build
RUN python -m pip install bdsf==1.8.15 numpy==1.16.2
RUN sed -e "s|INSTALLDIR|/opt|" /opt/ddf-pipeline/misc/DDF.sh > /opt/DDFacet/init.sh
RUN sed 's/numpy (<=1.16)/numpy (<=1.16.2)/g' /usr/local/lib/python2.7/dist-packages/meqtrees_cattery-1.7.0.dist-info/METADATA > /usr/local/lib/python2.7/dist-packages/meqtrees_cattery-1.7.0.dist-info/METADATA
RUN cd /opt && git clone https://www.ict.inaf.it/gitlab/lofarit/container-data.git
USER lofar
#USER lofar
ENV CONTAINER_NAME='ddf2_base3.10'
ENV DDF_PIPELINE_CATALOGS='/opt/container-data/bootstrap-cats/'