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Unverified Commit 4459b142 authored by Kelvin Rodriguez's avatar Kelvin Rodriguez Committed by GitHub
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thm2isis now uses out attrs and converted to func (#4504) 

* thm2isis now uses out attrs and converted to func

* removed commented code that manually set pixel type

* added gtests

* better params

* IR test added

* reordered things

* cropped images

* cropped image for outattr tests too
parent 29b517e6
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isis/src/base/apps/spkwriter/SpkSpiceSegment.cpp
+ 1
− 0
View file @ 4459b142
...@@ -220,6 +220,7 @@ bool SpkSpiceSegment::getImageTimes(Pvl &lab, double &start, double &end) const ...@@ -220,6 +220,7 @@ bool SpkSpiceSegment::getImageTimes(Pvl &lab, double &start, double &end) const
return (true); return (true);
} }
/** /**
* @brief Add elements to top and bottom of a matrix * @brief Add elements to top and bottom of a matrix
* *
......
isis/src/odyssey/apps/thm2isis/main.cpp
+ 4
− 258
View file @ 4459b142
...@@ -8,266 +8,12 @@ find files of those names at the top level of this repository. **/ ...@@ -8,266 +8,12 @@ find files of those names at the top level of this repository. **/
#include "Isis.h" #include "Isis.h"
#include <cstdio> #include "Application.h"
#include <string> #include "thm2isis.h"
#include "ProcessImportPds.h"
#include "LineManager.h"
#include "UserInterface.h"
#include "CubeAttribute.h"
#include "FileName.h"
#include "IException.h"
#include "iTime.h"
#include "ProcessByBrick.h"
#include "Brick.h"
#include "OriginalLabel.h"
using namespace std;
using namespace Isis; using namespace Isis;
vector<Cube *> outputCubes;
int frameletLines;
void TranslateLabels(Pvl &labelFile, Pvl &isis3, int numBands);
void separateFrames(Buffer &in);
void IsisMain() { void IsisMain() {
// Grab the file to import
ProcessImportPds p;
outputCubes.clear();
frameletLines = 192;
UserInterface &ui = Application::GetUserInterface();
FileName in = ui.GetFileName("FROM");
// Make sure it is a Themis EDR/RDR
bool projected;
try {
Pvl lab(in.expanded());
projected = lab.hasObject("IMAGE_MAP_PROJECTION");
QString id;
id = (QString)lab["DATA_SET_ID"];
id = id.simplified().trimmed();
if(!id.startsWith("ODY-M-THM")) {
QString msg = "Invalid DATA_SET_ID [" + id + "]";
throw IException(IException::Unknown, msg, _FILEINFO_);
}
}
catch(IException &e) {
QString msg = "Input file [" + in.expanded() +
"] does not appear to be " +
"in Themis EDR/RDR format";
throw IException(IException::Io, msg, _FILEINFO_);
}
//Checks if in file is rdr
if(projected) {
QString msg = "[" + in.name() + "] appears to be an rdr file.";
msg += " Use pds2isis.";
throw IException(IException::User, msg, _FILEINFO_);
}
// Ok looks good ... set it as the PDS file
Pvl pdsLab;
p.SetPdsFile(in.expanded(), "", pdsLab);
OriginalLabel origLabels(pdsLab);
Pvl isis3Lab;
TranslateLabels(pdsLab, isis3Lab, p.Bands());
// Set up the output cube
FileName outFile(ui.GetFileName("TO"));
PvlGroup &inst = isis3Lab.findGroup("Instrument", Pvl::Traverse);
if((QString)inst["InstrumentId"] == "THEMIS_VIS") {
Cube *even = new Cube();
Cube *odd = new Cube();
even->setDimensions(p.Samples(), p.Lines(), p.Bands());
even->setPixelType(Isis::Real);
odd->setDimensions(p.Samples(), p.Lines(), p.Bands());
odd->setPixelType(Isis::Real);
QString evenFile = outFile.path() + "/" + outFile.baseName() + ".even.cub";
QString oddFile = outFile.path() + "/" + outFile.baseName() + ".odd.cub";
even->create(evenFile);
odd->create(oddFile);
frameletLines = 192 / ((int)inst["SpatialSumming"]);
outputCubes.push_back(odd);
outputCubes.push_back(even);
}
else {
Cube *outCube = new Cube();
outCube->setDimensions(p.Samples(), p.Lines(), p.Bands());
outCube->setPixelType(Isis::Real);
outCube->create(outFile.expanded());
outputCubes.push_back(outCube);
}
// Import the file and then translate labels
p.StartProcess(separateFrames);
p.EndProcess();
for(int i = 0; i < (int)outputCubes.size(); i++) {
for(int grp = 0; grp < isis3Lab.groups(); grp++) {
// vis image?
if(outputCubes.size() != 1) {
int numFramelets = p.Lines() / frameletLines;
isis3Lab.findGroup("Instrument").addKeyword(
PvlKeyword("NumFramelets", toString(numFramelets)), Pvl::Replace
);
QString frameletType = ((i == 0) ? "Odd" : "Even");
isis3Lab.findGroup("Instrument").addKeyword(
PvlKeyword("Framelets", frameletType), Pvl::Replace
);
}
outputCubes[i]->putGroup(isis3Lab.group(grp));
}
p.WriteHistory(*outputCubes[i]);
outputCubes[i]->write(origLabels);
outputCubes[i]->close();
delete outputCubes[i];
}
outputCubes.clear();
}
//! Separates each of the individual VIS frames into their own file
void separateFrames(Buffer &in) {
// (line-1)/frameletHeight % numOutImages
int outputCube = (in.Line() - 1) / frameletLines % outputCubes.size();
LineManager mgr(*outputCubes[outputCube]);
mgr.SetLine(in.Line(), in.Band());
// mgr.Copy(in); doesn't work because the raw buffers dont match
for(int i = 0; i < mgr.size(); i++)
mgr[i] = in[i];
outputCubes[outputCube]->write(mgr);
// Null out every other cube
for(int i = 0; i < (int)outputCubes.size(); i++) {
if(i == outputCube) continue;
LineManager mgr(*outputCubes[i]);
mgr.SetLine(in.Line(), in.Band());
for(int j = 0; j < mgr.size(); j++) {
mgr[j] = Isis::Null;
}
outputCubes[i]->write(mgr);
}
}
void TranslateLabels(Pvl &pdsLab, Pvl &isis3, int numBands) {
// Create the Instrument Group
PvlGroup inst("Instrument");
inst += PvlKeyword("SpacecraftName", "MARS_ODYSSEY");
QString instId = (QString) pdsLab["InstrumentId"] + "_" +
(QString) pdsLab["DetectorId"];
inst += PvlKeyword("InstrumentId", instId);
inst += PvlKeyword("TargetName", (QString) pdsLab["TargetName"]);
inst += PvlKeyword("MissionPhaseName", (QString) pdsLab["MissionPhaseName"]);
inst += PvlKeyword("StartTime", (QString)pdsLab["StartTime"]);
inst += PvlKeyword("StopTime", (QString)pdsLab["StopTime"]);
inst += PvlKeyword("SpacecraftClockCount",
(QString) pdsLab["SpacecraftClockStartCount"]);
PvlObject &sqube = pdsLab.findObject("SPECTRAL_QUBE");
if(instId == "THEMIS_IR") {
inst += PvlKeyword("GainNumber", (QString)sqube["GainNumber"]);
inst += PvlKeyword("OffsetNumber", (QString)sqube["OffsetNumber"]);
inst += PvlKeyword("MissingScanLines", (QString)sqube["MissingScanLines"]);
inst += PvlKeyword("TimeDelayIntegration",
(QString)sqube["TimeDelayIntegrationFlag"]);
if(sqube.hasKeyword("SpatialSumming")) {
inst += PvlKeyword("SpatialSumming", (QString)sqube["SpatialSumming"]);
}
}
else {
inst += PvlKeyword("ExposureDuration", (QString)sqube["ExposureDuration"]);
inst += PvlKeyword("InterframeDelay", (QString)sqube["InterframeDelay"]);
inst += PvlKeyword("SpatialSumming", (QString)sqube["SpatialSumming"]);
}
// Add at time offset to the Instrument group
UserInterface &ui = Application::GetUserInterface(); UserInterface &ui = Application::GetUserInterface();
double spacecraftClockOffset = ui.GetDouble("TIMEOFFSET"); thm2isis(ui);
inst += PvlKeyword("SpacecraftClockOffset", toString(spacecraftClockOffset), "seconds");
isis3.addGroup(inst);
// Create the Band bin Group
PvlGroup bandBin("BandBin");
// The original band is the original ISIS cube band number upon ingestion
PvlKeyword originalBand("OriginalBand");
for(int i = 1; i <= numBands; i++) {
originalBand.addValue(toString(i));
}
bandBin += originalBand;
bandBin += sqube.findGroup("BandBin")["BandBinCenter"];
bandBin["BandBinCenter"].setName("Center");
bandBin += sqube.findGroup("BandBin")["BandBinWidth"];
bandBin["BandBinWidth"].setName("Width");
// The FilterNumber keyword is a list indicating the time-ordered filter number of the
// corresponding ISIS band. These values also indicate the physical order of the bands in the
// detector array. They are numbered by ascending times (or starting detector lines).
bandBin += sqube.findGroup("BandBin")["BandBinFilterNumber"];
bandBin["BandBinFilterNumber"].setName("FilterNumber");
// The BandNumber keyword is a list of wavelength-ordered band
// numbers corresponding to filter numbers for each ISIS band.
//
// For IR, BandNumber always matches filter number since the filters are found
// on the ccd in ascending wavelength order.
//
// For VIS, we have the following one to one correspondence of these keywords:
// BandNumber {1, 2, 3, 4, 5}
// FilterNumber {2, 5, 3, 4, 1}
//
// Note that the BandNumber will match the OriginalBand only if the image
// to be imported contains band number 1 and is not missing consecutive band numbers.
bandBin += sqube.findGroup("BandBin")["BandBinBandNumber"];
bandBin["BandBinBandNumber"].setName("BandNumber");
isis3.addGroup(bandBin);
// Create the archive Group
PvlGroup arch("Archive");
arch += PvlKeyword("DataSetId", (QString)pdsLab["DataSetId"]);
arch += PvlKeyword("ProducerId", (QString)pdsLab["ProducerId"]);
arch += PvlKeyword("ProductId", (QString)pdsLab["ProductId"]);
arch += PvlKeyword("ProductCreationTime",
(QString)pdsLab["ProductCreationTime"]);
arch += PvlKeyword("ProductVersionId", (QString)pdsLab["ProductVersionId"]);
// arch += PvlKeyword("ReleaseId",(string)pdsLab["ReleaseId"]);
arch += PvlKeyword("OrbitNumber", (QString)pdsLab["OrbitNumber"]);
arch += PvlKeyword("FlightSoftwareVersionId",
(QString)sqube["FlightSoftwareVersionId"]);
arch += PvlKeyword("CommandSequenceNumber",
(QString)sqube["CommandSequenceNumber"]);
arch += PvlKeyword("Description", (QString)sqube["Description"]);
isis3.addGroup(arch);
// Create the Kernel Group
PvlGroup kerns("Kernels");
if(instId == "THEMIS_IR") {
kerns += PvlKeyword("NaifFrameCode", toString(-53031));
}
else {
kerns += PvlKeyword("NaifFrameCode", toString(-53032));
}
isis3.addGroup(kerns);
} }
\ No newline at end of file
isis/src/odyssey/apps/thm2isis/thm2isis.cpp 0 → 100644
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#include <cstdio>
#include <string>
#include "ProcessImportPds.h"
#include "LineManager.h"
#include "UserInterface.h"
#include "CubeAttribute.h"
#include "FileName.h"
#include "IException.h"
#include "iTime.h"
#include "ProcessByBrick.h"
#include "Brick.h"
#include "OriginalLabel.h"
#include "thm2isis.h"
using namespace std;
namespace Isis {
static vector<Cube *> outputCubes;
static int frameletLines;
static void TranslateLabels(Pvl &labelFile, Pvl &isis3, int numBands, UserInterface &ui);
static void separateFrames(Buffer &in);
void thm2isis(UserInterface &ui) {
// Grab the file to import
ProcessImportPds p;
outputCubes.clear();
frameletLines = 192;
FileName in = ui.GetFileName("FROM");
// Make sure it is a Themis EDR/RDR
bool projected;
try {
Pvl lab(in.expanded());
projected = lab.hasObject("IMAGE_MAP_PROJECTION");
QString id;
id = (QString)lab["DATA_SET_ID"];
id = id.simplified().trimmed();
if(!id.startsWith("ODY-M-THM")) {
QString msg = "Invalid DATA_SET_ID [" + id + "]";
throw IException(IException::Unknown, msg, _FILEINFO_);
}
}
catch(IException &e) {
QString msg = "Input file [" + in.expanded() +
"] does not appear to be " +
"in Themis EDR/RDR format";
throw IException(IException::Io, msg, _FILEINFO_);
}
//Checks if in file is rdr
if(projected) {
QString msg = "[" + in.name() + "] appears to be an rdr file.";
msg += " Use pds2isis.";
throw IException(IException::User, msg, _FILEINFO_);
}
// Ok looks good ... set it as the PDS file
Pvl pdsLab;
p.SetPdsFile(in.expanded(), "", pdsLab);
OriginalLabel origLabels(pdsLab);
Pvl isis3Lab;
TranslateLabels(pdsLab, isis3Lab, p.Bands(), ui);
// Set up the output cube
FileName outFile(ui.GetFileName("TO"));
PvlGroup &inst = isis3Lab.findGroup("Instrument", Pvl::Traverse);
CubeAttributeOutput outAttr = ui.GetOutputAttribute("to");
if((QString)inst["InstrumentId"] == "THEMIS_VIS") {
Cube *even = new Cube();
Cube *odd = new Cube();
even->setDimensions(p.Samples(), p.Lines(), p.Bands());
odd->setDimensions(p.Samples(), p.Lines(), p.Bands());
QString evenFile = outFile.path() + "/" + outFile.baseName() + ".even.cub";
QString oddFile = outFile.path() + "/" + outFile.baseName() + ".odd.cub";
even->create(evenFile, outAttr);
odd->create(oddFile, outAttr);
frameletLines = 192 / ((int)inst["SpatialSumming"]);
outputCubes.push_back(odd);
outputCubes.push_back(even);
}
else {
Cube *outCube = new Cube();
outCube->setDimensions(p.Samples(), p.Lines(), p.Bands());
outCube->create(outFile.expanded(), outAttr);
outputCubes.push_back(outCube);
}
// Import the file and then translate labels
p.StartProcess(separateFrames);
p.EndProcess();
for(int i = 0; i < (int)outputCubes.size(); i++) {
for(int grp = 0; grp < isis3Lab.groups(); grp++) {
// vis image?
if(outputCubes.size() != 1) {
int numFramelets = p.Lines() / frameletLines;
isis3Lab.findGroup("Instrument").addKeyword(
PvlKeyword("NumFramelets", toString(numFramelets)), Pvl::Replace
);
QString frameletType = ((i == 0) ? "Odd" : "Even");
isis3Lab.findGroup("Instrument").addKeyword(
PvlKeyword("Framelets", frameletType), Pvl::Replace
);
}
outputCubes[i]->putGroup(isis3Lab.group(grp));
}
p.WriteHistory(*outputCubes[i]);
outputCubes[i]->write(origLabels);
outputCubes[i]->close();
delete outputCubes[i];
}
outputCubes.clear();
}
//! Separates each of the individual VIS frames into their own file
void separateFrames(Buffer &in) {
// (line-1)/frameletHeight % numOutImages
int outputCube = (in.Line() - 1) / frameletLines % outputCubes.size();
LineManager mgr(*outputCubes[outputCube]);
mgr.SetLine(in.Line(), in.Band());
// mgr.Copy(in); doesn't work because the raw buffers dont match
for(int i = 0; i < mgr.size(); i++)
mgr[i] = in[i];
outputCubes[outputCube]->write(mgr);
// Null out every other cube
for(int i = 0; i < (int)outputCubes.size(); i++) {
if(i == outputCube) continue;
LineManager mgr(*outputCubes[i]);
mgr.SetLine(in.Line(), in.Band());
for(int j = 0; j < mgr.size(); j++) {
mgr[j] = Isis::Null;
}
outputCubes[i]->write(mgr);
}
}
void TranslateLabels(Pvl &pdsLab, Pvl &isis3, int numBands, UserInterface &ui) {
// Create the Instrument Group
PvlGroup inst("Instrument");
inst += PvlKeyword("SpacecraftName", "MARS_ODYSSEY");
QString instId = (QString) pdsLab["InstrumentId"] + "_" +
(QString) pdsLab["DetectorId"];
inst += PvlKeyword("InstrumentId", instId);
inst += PvlKeyword("TargetName", (QString) pdsLab["TargetName"]);
inst += PvlKeyword("MissionPhaseName", (QString) pdsLab["MissionPhaseName"]);
inst += PvlKeyword("StartTime", (QString)pdsLab["StartTime"]);
inst += PvlKeyword("StopTime", (QString)pdsLab["StopTime"]);
inst += PvlKeyword("SpacecraftClockCount",
(QString) pdsLab["SpacecraftClockStartCount"]);
PvlObject &sqube = pdsLab.findObject("SPECTRAL_QUBE");
if(instId == "THEMIS_IR") {
inst += PvlKeyword("GainNumber", (QString)sqube["GainNumber"]);
inst += PvlKeyword("OffsetNumber", (QString)sqube["OffsetNumber"]);
inst += PvlKeyword("MissingScanLines", (QString)sqube["MissingScanLines"]);
inst += PvlKeyword("TimeDelayIntegration",
(QString)sqube["TimeDelayIntegrationFlag"]);
if(sqube.hasKeyword("SpatialSumming")) {
inst += PvlKeyword("SpatialSumming", (QString)sqube["SpatialSumming"]);
}
}
else {
inst += PvlKeyword("ExposureDuration", (QString)sqube["ExposureDuration"]);
inst += PvlKeyword("InterframeDelay", (QString)sqube["InterframeDelay"]);
inst += PvlKeyword("SpatialSumming", (QString)sqube["SpatialSumming"]);
}
// Add at time offset to the Instrument group
double spacecraftClockOffset = ui.GetDouble("TIMEOFFSET");
inst += PvlKeyword("SpacecraftClockOffset", toString(spacecraftClockOffset), "seconds");
isis3.addGroup(inst);
// Create the Band bin Group
PvlGroup bandBin("BandBin");
// The original band is the original ISIS cube band number upon ingestion
PvlKeyword originalBand("OriginalBand");
for(int i = 1; i <= numBands; i++) {
originalBand.addValue(toString(i));
}
bandBin += originalBand;
bandBin += sqube.findGroup("BandBin")["BandBinCenter"];
bandBin["BandBinCenter"].setName("Center");
bandBin += sqube.findGroup("BandBin")["BandBinWidth"];
bandBin["BandBinWidth"].setName("Width");
// The FilterNumber keyword is a list indicating the time-ordered filter number of the
// corresponding ISIS band. These values also indicate the physical order of the bands in the
// detector array. They are numbered by ascending times (or starting detector lines).
bandBin += sqube.findGroup("BandBin")["BandBinFilterNumber"];
bandBin["BandBinFilterNumber"].setName("FilterNumber");
// The BandNumber keyword is a list of wavelength-ordered band
// numbers corresponding to filter numbers for each ISIS band.
//
// For IR, BandNumber always matches filter number since the filters are found
// on the ccd in ascending wavelength order.
//
// For VIS, we have the following one to one correspondence of these keywords:
// BandNumber {1, 2, 3, 4, 5}
// FilterNumber {2, 5, 3, 4, 1}
//
// Note that the BandNumber will match the OriginalBand only if the image
// to be imported contains band number 1 and is not missing consecutive band numbers.
bandBin += sqube.findGroup("BandBin")["BandBinBandNumber"];
bandBin["BandBinBandNumber"].setName("BandNumber");
isis3.addGroup(bandBin);
// Create the archive Group
PvlGroup arch("Archive");
arch += PvlKeyword("DataSetId", (QString)pdsLab["DataSetId"]);
arch += PvlKeyword("ProducerId", (QString)pdsLab["ProducerId"]);
arch += PvlKeyword("ProductId", (QString)pdsLab["ProductId"]);
arch += PvlKeyword("ProductCreationTime",
(QString)pdsLab["ProductCreationTime"]);
arch += PvlKeyword("ProductVersionId", (QString)pdsLab["ProductVersionId"]);
// arch += PvlKeyword("ReleaseId",(string)pdsLab["ReleaseId"]);
arch += PvlKeyword("OrbitNumber", (QString)pdsLab["OrbitNumber"]);
arch += PvlKeyword("FlightSoftwareVersionId",
(QString)sqube["FlightSoftwareVersionId"]);
arch += PvlKeyword("CommandSequenceNumber",
(QString)sqube["CommandSequenceNumber"]);
arch += PvlKeyword("Description", (QString)sqube["Description"]);
isis3.addGroup(arch);
// Create the Kernel Group
PvlGroup kerns("Kernels");
if(instId == "THEMIS_IR") {
kerns += PvlKeyword("NaifFrameCode", toString(-53031));
}
else {
kerns += PvlKeyword("NaifFrameCode", toString(-53032));
}
isis3.addGroup(kerns);
}
}
\ No newline at end of file
isis/src/odyssey/apps/thm2isis/thm2isis.h 0 → 100644
+ 12
− 0
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#ifndef thm2isis_h // Change this to your app name in all lower case suffixed with _h (e.g. campt_h, cam2map_h etc.)
#define thm2isis_h
#include "Cube.h"
#include "UserInterface.h"
namespace Isis {
extern void thm2isis(UserInterface &ui);
}
#endif
\ No newline at end of file
isis/src/odyssey/apps/thm2isis/tsts/Makefile deleted 100644 → 0
+ 0
− 4
View file @ 29b517e6
BLANKS = "%-6s"
LENGTH = "%-40s"
include $(ISISROOT)/make/isismake.tststree
isis/src/odyssey/apps/thm2isis/tsts/case01/Makefile deleted 100644 → 0
+ 0
− 9
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APPNAME = thm2isis
include $(ISISROOT)/make/isismake.tsts
commands:
$(APPNAME) from=$(INPUT)/I00831002RDR.QUB \
to=$(OUTPUT)/truth.cub > /dev/null;
cathist from=$(OUTPUT)/truth.cub \
to=$(OUTPUT)/historyTruth.pvl > /dev/null;
isis/src/odyssey/apps/thm2isis/tsts/case02/Makefile deleted 100644 → 0
+ 0
− 9
View file @ 29b517e6
APPNAME = thm2isis
include $(ISISROOT)/make/isismake.tsts
commands:
$(APPNAME) from=$(INPUT)/V00821003RDR.QUB \
to=$(OUTPUT)/thm2isis-Truth3.cub+32bit > /dev/null;
cathist from=$(OUTPUT)/thm2isis-Truth3.even.cub+32bit \
to=$(OUTPUT)/historyTruth.pvl > /dev/null;
isis/tests/FunctionalTestsThm2isis.cpp 0 → 100644
+ 232
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#include "Fixtures.h"
#include "Pvl.h"
#include "PvlGroup.h"
#include "Histogram.h"
#include "TestUtilities.h"
#include "thm2isis.h"
#include "gtest/gtest.h"
using namespace Isis;
static QString APP_XML = FileName("$ISISROOT/bin/xml/thm2isis.xml").expanded();
TEST_F(TempTestingFiles, FunctionalTestThm2isisVis) {
// tempDir exists if the fixture subclasses TempTestingFiles, which most do
QString outCubeFileName = tempDir.path() + "/test.cub";
QVector<QString> args = {"from=data/thm2isis/V00821003RDR_cropped.QUB", "to="+outCubeFileName};
UserInterface options(APP_XML, args);
try {
thm2isis(options);
}
catch (IException &e) {
FAIL() << "Unable to open image: " << e.what() << std::endl;
}
// open even cube
Cube evenCube( tempDir.path() + "/test.even.cub");
Pvl *isisLabel = evenCube.label();
// Dimensions Group
EXPECT_EQ(evenCube.sampleCount(), 1024);
EXPECT_EQ(evenCube.lineCount(), 200);
EXPECT_EQ(evenCube.bandCount(), 5);
// Pixels Group
EXPECT_EQ(PixelTypeName(evenCube.pixelType()), "Real");
EXPECT_EQ(ByteOrderName(evenCube.byteOrder()), "Lsb");
EXPECT_DOUBLE_EQ(evenCube.base(), 0.0);
EXPECT_DOUBLE_EQ(evenCube.multiplier(), 1.0);
// Instrument Group
PvlGroup &inst = isisLabel->findGroup("Instrument", Pvl::Traverse);
EXPECT_EQ(inst["SpacecraftName"][0].toStdString(), "MARS_ODYSSEY");
EXPECT_EQ(inst["InstrumentId"][0].toStdString(), "THEMIS_VIS" );
EXPECT_EQ(inst["TargetName"][0].toStdString(), "MARS" );
EXPECT_EQ(inst["SpacecraftClockCount"][0].toStdString(), "698642092.025" );
EXPECT_EQ(inst["ExposureDuration"][0].toStdString(), "6.0" );
EXPECT_EQ(inst["StartTime"][0].toStdString(), "2002-02-20T03:14:02.471000" );
EXPECT_EQ(inst["StopTime"][0].toStdString(), "2002-02-20T03:14:09.471000" );
EXPECT_EQ(inst["Framelets"][0].toStdString(), "Even" );
EXPECT_EQ(inst["InterframeDelay"][0].toStdString(), "1.0" );
EXPECT_EQ(int(inst["NumFramelets"]), 1);
// Archive Group
PvlGroup &archive = isisLabel->findGroup("Archive", Pvl::Traverse);
EXPECT_EQ(archive["DataSetId"][0].toStdString(), "ODY-M-THM-3-VISRDR-V1.0" );
EXPECT_EQ(archive["ProductId"][0].toStdString(), "V00821003RDR" );
EXPECT_EQ(archive["ProductCreationTime"][0].toStdString(), "2003-07-08T03:07:17" );
EXPECT_EQ(double(archive["ProductVersionId"]), 1.3);
// BandBin Group
PvlGroup &bandbin = isisLabel->findGroup("BandBin", Pvl::Traverse);
EXPECT_EQ(bandbin["OriginalBand"].size(), 5);
EXPECT_EQ(bandbin["Center"].size(), 5);
EXPECT_EQ(bandbin["Width"].size(), 5);
EXPECT_EQ(bandbin["FilterNumber"].size(), 5);
// Kernels Group
PvlGroup &kernel = isisLabel->findGroup("Kernels", Pvl::Traverse);
EXPECT_EQ(int(kernel["NaifFrameCode"]), -53032);
std::unique_ptr<Histogram> hist (evenCube.histogram());
EXPECT_NEAR(hist->Average(), 0.0012095900723426705, 0.0001);
EXPECT_NEAR(hist->Sum(), 9.5743556655943394, .00001);
EXPECT_EQ(hist->ValidPixels(), 7920);
EXPECT_NEAR(hist->StandardDeviation(), 2.241887e-05, .00001);
// open odd cube
Cube oddCube( tempDir.path() + "/test.odd.cub");
isisLabel = oddCube.label();
// Dimensions Group
EXPECT_EQ(oddCube.sampleCount(), 1024);
EXPECT_EQ(oddCube.lineCount(), 200);
EXPECT_EQ(oddCube.bandCount(), 5);
// Pixels Group
EXPECT_EQ(PixelTypeName(oddCube.pixelType()), "Real");
EXPECT_EQ(ByteOrderName(oddCube.byteOrder()), "Lsb");
EXPECT_DOUBLE_EQ(oddCube.base(), 0.0);
EXPECT_DOUBLE_EQ(oddCube.multiplier(), 1.0);
// Instrument Group
inst = isisLabel->findGroup("Instrument", Pvl::Traverse);
EXPECT_EQ(inst["SpacecraftName"][0].toStdString(), "MARS_ODYSSEY");
EXPECT_EQ(inst["InstrumentId"][0].toStdString(), "THEMIS_VIS" );
EXPECT_EQ(inst["TargetName"][0].toStdString(), "MARS" );
EXPECT_EQ(inst["SpacecraftClockCount"][0].toStdString(), "698642092.025" );
EXPECT_EQ(inst["ExposureDuration"][0].toStdString(), "6.0" );
EXPECT_EQ(inst["StartTime"][0].toStdString(), "2002-02-20T03:14:02.471000" );
EXPECT_EQ(inst["StopTime"][0].toStdString(), "2002-02-20T03:14:09.471000" );
EXPECT_EQ(inst["Framelets"][0].toStdString(), "Odd" );
EXPECT_EQ(inst["InterframeDelay"][0].toStdString(), "1.0" );
EXPECT_EQ(int(inst["NumFramelets"]), 1);
// Archive Group
archive = isisLabel->findGroup("Archive", Pvl::Traverse);
EXPECT_EQ(archive["DataSetId"][0].toStdString(), "ODY-M-THM-3-VISRDR-V1.0" );
EXPECT_EQ(archive["ProductId"][0].toStdString(), "V00821003RDR" );
EXPECT_EQ(archive["ProductCreationTime"][0].toStdString(), "2003-07-08T03:07:17" );
EXPECT_EQ(double(archive["ProductVersionId"]), 1.3);
// BandBin Group
bandbin = isisLabel->findGroup("BandBin", Pvl::Traverse);
EXPECT_EQ(bandbin["OriginalBand"].size(), 5);
EXPECT_EQ(bandbin["Center"].size(), 5);
EXPECT_EQ(bandbin["Width"].size(), 5);
EXPECT_EQ(bandbin["FilterNumber"].size(), 5);
// Kernels Group
kernel = isisLabel->findGroup("Kernels", Pvl::Traverse);
EXPECT_EQ(int(kernel["NaifFrameCode"]), -53032);
hist.reset(oddCube.histogram());
EXPECT_NEAR(hist->Average(), 0.0012095900723426705, 0.0001);
EXPECT_NEAR(hist->Sum(), 228.48262293543667, .00001);
EXPECT_EQ(hist->ValidPixels(), 188100);
EXPECT_NEAR(hist->StandardDeviation(), 2.241887e-05, .00001);
}
TEST_F(TempTestingFiles, FunctionalTestThm2isisIr) {
QString newLabelPath = "data/thm2isis/I00831002RDR_cropped.QUB" ;
// tempDir exists if the fixture subclasses TempTestingFiles, which most do
QString outCubeFileName = tempDir.path() + "/test.cub";
QVector<QString> args = {"from=" + newLabelPath, "to="+outCubeFileName};
UserInterface options(APP_XML, args);
try {
thm2isis(options);
}
catch (IException &e) {
FAIL() << "Unable to open image: " << e.what() << std::endl;
}
Cube oCube(outCubeFileName);
Pvl *isisLabel = oCube.label();
// Dimensions Group
EXPECT_EQ(oCube.sampleCount(), 10);
EXPECT_EQ(oCube.lineCount(), 5);
EXPECT_EQ(oCube.bandCount(), 10);
// Pixels Group
EXPECT_EQ(PixelTypeName(oCube.pixelType()), "Real");
EXPECT_EQ(ByteOrderName(oCube.byteOrder()), "Lsb");
EXPECT_DOUBLE_EQ(oCube.base(), 0.0);
EXPECT_DOUBLE_EQ(oCube.multiplier(), 1.0);
// Instrument Group
PvlGroup &inst = isisLabel->findGroup("Instrument", Pvl::Traverse);
EXPECT_EQ(inst["SpacecraftName"][0].toStdString(), "MARS_ODYSSEY");
EXPECT_EQ(inst["InstrumentId"][0].toStdString(), "THEMIS_IR" );
EXPECT_EQ(inst["TargetName"][0].toStdString(), "MARS" );
EXPECT_EQ(inst["SpacecraftClockCount"][0].toStdString(), "698713127.000" );
EXPECT_EQ(inst["StartTime"][0].toStdString(), "2002-02-20T22:57:57.253000" );
EXPECT_EQ(inst["StopTime"][0].toStdString(), "2002-02-20T23:00:56.983000" );
EXPECT_EQ((int)inst["GainNumber"], 16);
// Archive Group
PvlGroup &archive = isisLabel->findGroup("Archive", Pvl::Traverse);
EXPECT_EQ(archive["DataSetId"][0].toStdString(), "ODY-M-THM-3-IRRDR-V1.0" );
EXPECT_EQ(archive["ProductId"][0].toStdString(), "I00831002RDR" );
EXPECT_EQ(archive["ProductCreationTime"][0].toStdString(), "2003-03-12T12:59:33" );
EXPECT_EQ(double(archive["ProductVersionId"]), 1.4);
// BandBin Group
PvlGroup &bandbin = isisLabel->findGroup("BandBin", Pvl::Traverse);
EXPECT_EQ(bandbin["OriginalBand"].size(), 10);
EXPECT_EQ(bandbin["Center"].size(), 10);
EXPECT_EQ(bandbin["Width"].size(), 10);
EXPECT_EQ(bandbin["FilterNumber"].size(), 10);
std::unique_ptr<Histogram> hist (oCube.histogram());
EXPECT_NEAR(hist->Minimum(), 0.00029065093258395791, 0.0001);
EXPECT_NEAR(hist->Maximum(), 0.00064912717789411545, 0.0001);
EXPECT_NEAR(hist->Average(), 0.00047608536842744795, 0.0001);
EXPECT_NEAR(hist->Sum(), 0.023804268421372399, .00001);
EXPECT_EQ(hist->ValidPixels(), 50);
EXPECT_NEAR(hist->StandardDeviation(), 0.00011232993701816659, .00001);
}
TEST_F(TempTestingFiles, FunctionalTestThm2isisOutAttributes) {
// tempDir exists if the fixture subclasses TempTestingFiles, which most do
QString outCubeFileName = tempDir.path() + "/test.cub+msb+8bit+0.0012:0.0013";
QVector<QString> args = {"from=data/thm2isis/V00821003RDR_cropped.QUB", "to="+outCubeFileName};
UserInterface options(APP_XML, args);
try {
thm2isis(options);
}
catch (IException &e) {
FAIL() << "Unable to open image: " << e.what() << std::endl;
}
// open even cube
Cube evenCube( tempDir.path() + "/test.even.cub");
// Pixels Group
EXPECT_EQ(PixelTypeName(evenCube.pixelType()).toStdString(), "UnsignedByte");
EXPECT_EQ(ByteOrderName(evenCube.byteOrder()).toStdString(), "Msb");
EXPECT_DOUBLE_EQ(evenCube.base(), 0.001199604743083);
EXPECT_DOUBLE_EQ(evenCube.multiplier(), 3.95256916996048e-07);
std::unique_ptr<Histogram> hist (evenCube.histogram());
EXPECT_NEAR(hist->Minimum(), 0.0012, 0.0001);
EXPECT_NEAR(hist->Maximum(), 0.0013, 0.0001);
EXPECT_NEAR(hist->Average(), 0.00122, 0.0001);
EXPECT_NEAR(hist->Sum(), 6.6702830039524876, .00001);
EXPECT_EQ(hist->ValidPixels(), 5472);
EXPECT_NEAR(hist->StandardDeviation(), 1.5069986471567319e-05, .00001);
}
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