Removed links to applications imbedded in documentation text and replaced with...

Removed links to applications imbedded in documentation text and replaced with italicized application name.  Added application links to the Related Objects and Documents section of the documentation.  Fixes mantis ticket #1525.

git-svn-id: http://subversion.wr.usgs.gov/repos/prog/isis3/trunk@5028 41f8697f-d340-4b68-9986-7bafba869bb8