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Commit 09b691dc authored by jlaura's avatar jlaura Committed by GitHub
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Updates to the GPF reader/writer (#21) 

* Adds prototype socet gpf read from @thareUSGS

* Adds test to gpf reader

* Adds length assertion and logic for dynamic cols

* removed static struct arr

* Finishing the merge cleanly

* removed assertTrue

* Fixes test to compare in/out files.
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plio/examples/SocetGXP/out_InSightE08_XW.gpf deleted 100644 → 0
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GROUND POINT FILE
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plio/io/.ipynb_checkpoints/Untitled-checkpoint.ipynb deleted 100644 → 0
+ 0
− 6
View file @ 7aac3c31
{
"cells": [],
"metadata": {},
"nbformat": 4,
"nbformat_minor": 2
}
plio/io/io_gpf.py
+ 7
− 7
View file @ 09b691dc
import numpy as np import numpy as np
import pandas as pd import pandas as pd
def read_gpf(input_data): def read_gpf(input_data):
...@@ -43,7 +43,7 @@ def read_gpf(input_data): ...@@ -43,7 +43,7 @@ def read_gpf(input_data):
assert int(cnt) == len(df) assert int(cnt) == len(df)
return df return df
def save_gpf(df, output_file): def save_gpf(df, output_file):
""" """
Write a socet gpf file from a gpf-defined pandas dataframe Write a socet gpf file from a gpf-defined pandas dataframe
...@@ -55,7 +55,7 @@ def save_gpf(df, output_file): ...@@ -55,7 +55,7 @@ def save_gpf(df, output_file):
output_file : str output_file : str
path to the output data file path to the output data file
Returns Returns
------- -------
int : success value int : success value
...@@ -68,10 +68,10 @@ def save_gpf(df, output_file): ...@@ -68,10 +68,10 @@ def save_gpf(df, output_file):
except: except:
print ('Unable to open output gpf file: {0}'.format(output_file)) print ('Unable to open output gpf file: {0}'.format(output_file))
return 1 return 1
#grab number of rows in pandas dataframe #grab number of rows in pandas dataframe
numpts = len(df) numpts = len(df)
#Output gpf header #Output gpf header
outGPF.write('GROUND POINT FILE\n') outGPF.write('GROUND POINT FILE\n')
outGPF.write('{0}\n'.format(numpts)) outGPF.write('{0}\n'.format(numpts))
...@@ -83,6 +83,6 @@ def save_gpf(df, output_file): ...@@ -83,6 +83,6 @@ def save_gpf(df, output_file):
outGPF.write('{0} {1} {2}\n'.format(row['lat_y_North'], row['long_X_East'], row['ht'])) outGPF.write('{0} {1} {2}\n'.format(row['lat_y_North'], row['long_X_East'], row['ht']))
outGPF.write('{0} {1} {2}\n'.format(row['sigma0'], row['sigma1'], row['sigma2'])) outGPF.write('{0} {1} {2}\n'.format(row['sigma0'], row['sigma1'], row['sigma2']))
outGPF.write('{0} {1} {2}\n\n'.format(row['res0'], row['res1'], row['res2'])) outGPF.write('{0} {1} {2}\n\n'.format(row['res0'], row['res1'], row['res2']))
outGPF.close() outGPF.close()
return 0 return
plio/io/tests/test_gpf.py → plio/io/tests/test_io_gpf.py
+ 45
− 0
View file @ 09b691dc
...@@ -3,21 +3,16 @@ import pandas as pd ...@@ -3,21 +3,16 @@ import pandas as pd
from pandas.util.testing import assert_frame_equal from pandas.util.testing import assert_frame_equal
from plio.io.io_gpf import read_gpf from plio.io.io_gpf import read_gpf
from plio.io.io_gpf import save_gpf from plio.io.io_gpf import save_gpf
from plio.examples import get_path from plio.examples import get_path
import filecmp
import pytest import pytest
@pytest.fixture @pytest.fixture
def insight_gpf(): def insight_gpf():
return get_path('InSightE08_XW.gpf') return get_path('InSightE08_XW.gpf')
def out_insight_gpf(): @pytest.fixture()
return get_path('out_InSightE08_XW.gpf')
@pytest.fixture()
def insight_expected(): def insight_expected():
return pd.read_csv(get_path('InSightE08_XW.csv')) return pd.read_csv(get_path('InSightE08_XW.csv'))
...@@ -25,10 +20,26 @@ def insight_expected(): ...@@ -25,10 +20,26 @@ def insight_expected():
def test_read_gfp(gpf, expected): def test_read_gfp(gpf, expected):
df = read_gpf(gpf) df = read_gpf(gpf)
assert_frame_equal(df, expected) assert_frame_equal(df, expected)
@pytest.mark.parametrize('gpf, out_gpf', [(insight_gpf(),out_insight_gpf())]) @pytest.mark.parametrize('gpf', [(insight_gpf())])
def test_write_gfp(gpf, out_gpf): def test_write_gpf(gpf):
"""
We test by manually comparing files and not using filecmp so that we
are not testing float point precision differences, e.g. 0.0 == 0.00000000.
"""
df = read_gpf(gpf) df = read_gpf(gpf)
val = save_gpf(df, out_gpf) save_gpf(df, 'out.gpf')
assertTrue(filecmp.cmp(gpf, out_gpf, shallow=True), "save_gpf does not create an equal file.")
with open(gpf) as f:
fl = f.readlines()
with open('out.gpf') as f:
fs = f.readlines()
# Check that the header is the same
for i in range(3):
assert fl[i] == fs[i]
truth_arr = np.genfromtxt(gpf, skip_header=3)
test_arr = np.genfromtxt('out.gpf', skip_header=3)
np.testing.assert_array_almost_equal(truth_arr, test_arr)
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