Merge pull request #33 from tthatcher95/master

Added bin and notebooks directories, also added Socetnet2ISIS script

bin/Socetnet2ISIS.py

+import os
+import numpy as np
+
+# Reads a .atf file and outputs all of the
+# .ipf, .gpf, .sup, .prj, and path to locate the
+# .apf file (should be the same as all others)
+def read_atf(atf_file):
+    with open(atf_file) as f:
+
+        files = []
+        ipf = []
+        sup = []
+        files_dict = []
+
+        # Grabs every PRJ, GPF, SUP, and IPF image from the ATF file
+        for line in f:
+            if line[-4:-1] == 'prj' or line[-4:-1] == 'gpf' or line[-4:-1] == 'sup' or line[-4:-1] == 'ipf' or line[-4:-1] == 'atf':
+                files.append(line)
+
+        files = np.array(files)
+
+        # Creates appropriate arrays for certain files in the right format
+        for file in files:
+            file = file.strip()
+            file = file.split(' ')
+
+            # Grabs all the IPF files
+            if file[1].endswith('.ipf'):
+                ipf.append(file[1])
+
+            # Grabs all the SUP files
+            if file[1].endswith('.sup'):
+                sup.append(file[1])
+
+            files_dict.append(file)
+
+        # Creates a dict out of file lists for GPF, PRJ, IPF, and ATF
+        files_dict = (dict(files_dict))
+
+        # Sets the value of IMAGE_IPF to all IPF images
+        files_dict['IMAGE_IPF'] = ipf
+
+        # Sets the value of IMAGE_SUP to all SUP images
+        files_dict['IMAGE_SUP'] = sup
+
+        # Sets the value of PATH to the path of the ATF file
+        files_dict['PATH'] = os.path.dirname(os.path.abspath(atf_file))
+
+        return files_dict

notebooks/Socet2ISIS.ipynb

+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": 67,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "{'ATF_FILE': 'CTX_Athabasca_Middle_step0.atf',\n",
+       " 'GP_FILE': 'CTX_Athabasca_Middle.gpf',\n",
+       " 'IMAGE_IPF': ['P19_008344_1894_XN_09N203W.ipf',\n",
+       "  'P20_008845_1894_XN_09N203W.ipf',\n",
+       "  'P03_002371_1888_XI_08N204W.ipf',\n",
+       "  'P01_001540_1889_XI_08N204W.ipf',\n",
+       "  'P01_001606_1897_XI_09N203W.ipf',\n",
+       "  'P03_002226_1895_XI_09N203W.ipf'],\n",
+       " 'IMAGE_SUP': ['P19_008344_1894_XN_09N203W.sup',\n",
+       "  'P20_008845_1894_XN_09N203W.sup',\n",
+       "  'P03_002371_1888_XI_08N204W.sup',\n",
+       "  'P01_001540_1889_XI_08N204W.sup',\n",
+       "  'P01_001606_1897_XI_09N203W.sup',\n",
+       "  'P03_002226_1895_XI_09N203W.sup'],\n",
+       " 'PATH': '/home/tthatcher/Desktop/Projects/Plio/plio/notebooks',\n",
+       " 'PROJECT': 'D:\\\\data\\\\CTX_Athabasca_Middle.prj'}"
+      ]
+     },
+     "execution_count": 67,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "import os\n",
+    "import numpy as np\n",
+    "\n",
+    "# Reads a .atf file and outputs all of the \n",
+    "# .ipf, .gpf, .sup, .prj, and path to locate the \n",
+    "# .apf file (should be the same as all others) \n",
+    "def read_atf(atf_file):\n",
+    "    with open(atf_file) as f:\n",
+    "\n",
+    "        files = []\n",
+    "        ipf = []\n",
+    "        sup = []\n",
+    "        files_dict = []\n",
+    "        \n",
+    "        # Grabs every PRJ, GPF, SUP, and IPF image from the ATF file\n",
+    "        for line in f:\n",
+    "            if line[-4:-1] == 'prj' or line[-4:-1] == 'gpf' or line[-4:-1] == 'sup' or line[-4:-1] == 'ipf' or line[-4:-1] == 'atf':\n",
+    "                files.append(line)\n",
+    "        \n",
+    "        files = np.array(files)\n",
+    "        \n",
+    "        # Creates appropriate arrays for certain files in the right format\n",
+    "        for file in files:\n",
+    "            file = file.strip()\n",
+    "            file = file.split(' ')\n",
+    "\n",
+    "            # Grabs all the IPF files\n",
+    "            if file[1].endswith('.ipf'):\n",
+    "                ipf.append(file[1])\n",
+    "\n",
+    "            # Grabs all the SUP files\n",
+    "            if file[1].endswith('.sup'):\n",
+    "                sup.append(file[1])\n",
+    "\n",
+    "            files_dict.append(file)\n",
+    "\n",
+    "        # Creates a dict out of file lists for GPF, PRJ, IPF, and ATF\n",
+    "        files_dict = (dict(files_dict))\n",
+    "        \n",
+    "        # Sets the value of IMAGE_IPF to all IPF images\n",
+    "        files_dict['IMAGE_IPF'] = ipf\n",
+    "        \n",
+    "        # Sets the value of IMAGE_SUP to all SUP images\n",
+    "        files_dict['IMAGE_SUP'] = sup\n",
+    "        \n",
+    "        # Sets the value of PATH to the path of the ATF file\n",
+    "        files_dict['PATH'] = os.path.dirname(os.path.abspath(atf_file))\n",
+    "        \n",
+    "        return files_dict\n",
+    "    \n",
+    "read_atf('CTX_Athabasca_Middle_step0.atf')"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.6.4"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}