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Commit ceb70c31 authored by Giovanni La Mura's avatar Giovanni La Mura
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Set up ScattererConfiguration HDF5 output

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src/include/Configuration.h
+ 9
− 2
View file @ ceb70c31
......@@ -213,7 +213,7 @@ class ScattererConfiguration {
friend void cluster(std::string, std::string, std::string);
friend void sphere(std::string, std::string, std::string);
protected:
//! \brief Matrix of dielectric parameters with size [NON_TRANS_LAYERS x N_SPHERES x LAYERS].
//! \brief Matrix of dielectric parameters with size [NON_TRANS_LAYERS x N_SPHERES x N_SCALES].
std::complex<double> ***dc0_matrix;
//! \brief Vector of sphere radii expressed in m, with size [N_SPHERES].
double *radii_of_spheres;
......@@ -325,7 +325,7 @@ public:
double exdc,
double wp,
double xip
);
);
/*! \brief Destroy a scatterer configuration instance.
*/
......@@ -394,6 +394,13 @@ public:
* \param file_name: `string` Name of the file to be written.
*/
void write_formatted(std::string file_name);
/*! \brief Test whether two instances of ScattererConfiguration are equal.
*
* \param other: `ScattererConfiguration &` Reference to the instance to be compared with.
* \return result: `bool` True, if the two instances are equal, false otherwise.
*/
bool operator ==(ScattererConfiguration &other);
};
#endif
src/libnptm/Configuration.cpp
+ 198
− 115
View file @ ceb70c31
......@@ -39,7 +39,7 @@ GeometryConfiguration::GeometryConfiguration(
double in_ph_start, double in_ph_step, double in_ph_end,
double sc_ph_start, double sc_ph_step, double sc_ph_end,
int _jwtm
) {
) {
number_of_spheres = _nsph;
l_max = _lm;
in_pol = _in_pol;
......@@ -184,7 +184,7 @@ GeometryConfiguration* GeometryConfiguration::from_legacy(string file_name) {
in_ph_start, in_ph_step, in_ph_end,
sc_ph_start, sc_ph_step, sc_ph_end,
_jwtm
);
);
return conf;
}
......@@ -203,7 +203,7 @@ ScattererConfiguration::ScattererConfiguration(
double ex,
double w,
double x
) {
) {
number_of_spheres = nsph;
number_of_scales = nxi;
reference_variable_name = variable_name;
......@@ -268,112 +268,6 @@ ScattererConfiguration* ScattererConfiguration::from_binary(string file_name, st
return conf;
}
ScattererConfiguration* ScattererConfiguration::from_hdf5(string file_name) {
ScattererConfiguration *conf = NULL;
return conf;
}
ScattererConfiguration* ScattererConfiguration::from_legacy(string file_name) {
int nsph;
int *iog;
double _exdc, _wp, _xip;
int _idfc, nxi;
int *nshl_vector;
double *xi_vec;
double *ros_vector;
double **rcf_vector;
complex<double> ***dc0m;
int max_ici = 0;
fstream input;
input.open(file_name.c_str(), ios::in | ios::binary);
if (input.is_open()) {
input.read(reinterpret_cast<char *>(&nsph), sizeof(int));
iog = new int[nsph]();
for (int i = 0; i < nsph; i++) {
input.read(reinterpret_cast<char *>(&(iog[i])), sizeof(int));
}
input.read(reinterpret_cast<char *>(&_exdc), sizeof(double));
input.read(reinterpret_cast<char *>(&_wp), sizeof(double));
input.read(reinterpret_cast<char *>(&_xip), sizeof(double));
input.read(reinterpret_cast<char *>(&_idfc), sizeof(int));
input.read(reinterpret_cast<char *>(&nxi), sizeof(int));
try {
xi_vec = new double[nxi]();
} catch (const bad_alloc &ex) {
throw UnrecognizedConfigurationException("Wrong parameter set: invalid number of scales " + to_string(nxi));
}
for (int i = 0; i < nxi; i++) {
input.read(reinterpret_cast<char *>(&(xi_vec[i])), sizeof(double));
}
nshl_vector = new int[nsph]();
ros_vector = new double[nsph]();
rcf_vector = new double*[nsph];
for (int i115 = 1; i115 <= nsph; i115++) {
if (iog[i115 - 1] < i115) {
rcf_vector[i115 - 1] = new double[1]();
continue;
}
input.read(reinterpret_cast<char *>(&(nshl_vector[i115 - 1])), sizeof(int));
input.read(reinterpret_cast<char *>(&(ros_vector[i115 - 1])), sizeof(double));
int nsh = nshl_vector[i115 - 1];
if (max_ici < (nsh + 1) / 2) max_ici = (nsh + 1) / 2;
try {
rcf_vector[i115 - 1] = new double[nsh]();
} catch (const bad_alloc &ex) {
throw UnrecognizedConfigurationException("Wrong parameter set: invalid number of layers " + to_string(nsh));
}
for (int nsi = 0; nsi < nsh; nsi++) {
input.read(reinterpret_cast<char *>(&(rcf_vector[i115 - 1][nsi])), sizeof(double));
}
}
dc0m = new complex<double>**[max_ici];
int dim3 = (_idfc == 0) ? nxi : 1;
for (int dim1 = 0; dim1 < max_ici; dim1++) {
dc0m[dim1] = new complex<double>*[nsph];
for (int dim2 = 0; dim2 < nsph; dim2++) {
dc0m[dim1][dim2] = new complex<double>[dim3]();
}
}
for (int jxi468 = 1; jxi468 <= nxi; jxi468++) {
if (_idfc != 0 && jxi468 > 1) continue;
for (int i162 = 1; i162 <= nsph; i162++) {
if (iog[i162 - 1] < i162) continue;
int nsh = nshl_vector[i162 - 1];
int ici = (nsh + 1) / 2; // QUESTION: is integer division really intended here?
for (int i157 = 0; i157 < ici; i157++) {
double dc0_real, dc0_img;
input.read(reinterpret_cast<char *>(&dc0_real), sizeof(double));
input.read(reinterpret_cast<char *>(&dc0_img), sizeof(double));
dc0m[i157][i162 - 1][jxi468 - 1] = dc0_real + 1i * dc0_img;
}
}
}
input.close();
} else { // Opening of the input file did not succeed.
OpenConfigurationFileException ex(file_name);
throw ex;
}
ScattererConfiguration *conf = new ScattererConfiguration(
nsph,
xi_vec,
nxi,
"XIV",
iog,
ros_vector,
nshl_vector,
rcf_vector,
_idfc,
dc0m,
false,
_exdc,
_wp,
_xip
);
return conf;
}
ScattererConfiguration* ScattererConfiguration::from_dedfb(string dedfb_file_name) {
int num_lines = 0;
int last_read_line = 0;
......@@ -634,11 +528,166 @@ ScattererConfiguration* ScattererConfiguration::from_dedfb(string dedfb_file_nam
_exdc,
_wp,
_xip
);
);
delete[] file_lines;
return config;
}
ScattererConfiguration* ScattererConfiguration::from_hdf5(string file_name) {
ScattererConfiguration *conf = NULL;
unsigned int flags = H5F_ACC_RDONLY;
HDFFile *hdf_file = new HDFFile(file_name, flags);
herr_t status = hdf_file->get_status();
if (status == 0) {
int nsph;
int *iog;
double _exdc, _wp, _xip;
int _idfc, nxi;
int *nshl_vector;
double *xi_vec;
double *ros_vector;
double **rcf_vector;
complex<double> ***dc0m;
status = hdf_file->read("NSPH", "INT32_(1)", &nsph);
status = hdf_file->read("EXDC", "FLOAT64_(1)", &_exdc);
status = hdf_file->read("WP", "FLOAT64_(1)", &_wp);
status = hdf_file->read("XIP", "FLOAT64_(1)", &_xip);
status = hdf_file->read("IDFC", "INT32_(1)", &_idfc);
status = hdf_file->read("NXI", "INT32_(1)", &nxi);
iog = new int[nsph];
string str_type = "INT32_(" + to_string(nsph) + ")";
status = hdf_file.read("IOGVEC", str_type, iog);
int configuration_count = 0;
for (int ci = 0; ci < nsph; ci++) {
if (iog[ci] < ci + 1) continue;
configuration_count++;
}
nshl_vector = new int[configuration_count];
ros_vector = new double[configuration_count];
status = hdf_file->close();
conf = new ScattererConfiguration(
nsph,
xi_vec,
nxi,
"XIV",
iog,
ros_vector,
nshl_vector,
rcf_vector,
_idfc,
dc0m,
false,
_exdc,
_wp,
_xip
);
}
return conf;
}
ScattererConfiguration* ScattererConfiguration::from_legacy(string file_name) {
int nsph;
int *iog;
double _exdc, _wp, _xip;
int _idfc, nxi;
int *nshl_vector;
double *xi_vec;
double *ros_vector;
double **rcf_vector;
complex<double> ***dc0m;
int max_ici = 0;
fstream input;
input.open(file_name.c_str(), ios::in | ios::binary);
if (input.is_open()) {
input.read(reinterpret_cast<char *>(&nsph), sizeof(int));
iog = new int[nsph]();
for (int i = 0; i < nsph; i++) {
input.read(reinterpret_cast<char *>(&(iog[i])), sizeof(int));
}
input.read(reinterpret_cast<char *>(&_exdc), sizeof(double));
input.read(reinterpret_cast<char *>(&_wp), sizeof(double));
input.read(reinterpret_cast<char *>(&_xip), sizeof(double));
input.read(reinterpret_cast<char *>(&_idfc), sizeof(int));
input.read(reinterpret_cast<char *>(&nxi), sizeof(int));
try {
xi_vec = new double[nxi]();
} catch (const bad_alloc &ex) {
throw UnrecognizedConfigurationException("Wrong parameter set: invalid number of scales " + to_string(nxi));
}
for (int i = 0; i < nxi; i++) {
input.read(reinterpret_cast<char *>(&(xi_vec[i])), sizeof(double));
}
nshl_vector = new int[nsph]();
ros_vector = new double[nsph]();
rcf_vector = new double*[nsph];
for (int i115 = 1; i115 <= nsph; i115++) {
if (iog[i115 - 1] < i115) {
rcf_vector[i115 - 1] = new double[1]();
continue;
}
input.read(reinterpret_cast<char *>(&(nshl_vector[i115 - 1])), sizeof(int));
input.read(reinterpret_cast<char *>(&(ros_vector[i115 - 1])), sizeof(double));
int nsh = nshl_vector[i115 - 1];
if (max_ici < (nsh + 1) / 2) max_ici = (nsh + 1) / 2;
try {
rcf_vector[i115 - 1] = new double[nsh]();
} catch (const bad_alloc &ex) {
throw UnrecognizedConfigurationException("Wrong parameter set: invalid number of layers " + to_string(nsh));
}
for (int nsi = 0; nsi < nsh; nsi++) {
input.read(reinterpret_cast<char *>(&(rcf_vector[i115 - 1][nsi])), sizeof(double));
}
}
dc0m = new complex<double>**[max_ici];
int dim3 = (_idfc == 0) ? nxi : 1;
for (int dim1 = 0; dim1 < max_ici; dim1++) {
dc0m[dim1] = new complex<double>*[nsph];
for (int dim2 = 0; dim2 < nsph; dim2++) {
dc0m[dim1][dim2] = new complex<double>[dim3]();
}
}
for (int jxi468 = 1; jxi468 <= nxi; jxi468++) {
if (_idfc != 0 && jxi468 > 1) continue;
for (int i162 = 1; i162 <= nsph; i162++) {
if (iog[i162 - 1] < i162) continue;
int nsh = nshl_vector[i162 - 1];
int ici = (nsh + 1) / 2; // QUESTION: is integer division really intended here?
for (int i157 = 0; i157 < ici; i157++) {
double dc0_real, dc0_img;
input.read(reinterpret_cast<char *>(&dc0_real), sizeof(double));
input.read(reinterpret_cast<char *>(&dc0_img), sizeof(double));
dc0m[i157][i162 - 1][jxi468 - 1] = dc0_real + 1i * dc0_img;
}
}
}
input.close();
} else { // Opening of the input file did not succeed.
OpenConfigurationFileException ex(file_name);
throw ex;
}
ScattererConfiguration *conf = new ScattererConfiguration(
nsph,
xi_vec,
nxi,
"XIV",
iog,
ros_vector,
nshl_vector,
rcf_vector,
_idfc,
dc0m,
false,
_exdc,
_wp,
_xip
);
return conf;
}
void ScattererConfiguration::print() {
int ies = (use_external_sphere)? 1 : 0;
int max_ici = 0;
......@@ -880,7 +929,7 @@ void ScattererConfiguration::write_formatted(string file_name) {
wl_vec[i],
pu_vec[i],
ev_vec[i]
);
);
}
break;
case 1:
......@@ -900,7 +949,7 @@ void ScattererConfiguration::write_formatted(string file_name) {
pu_vec[i],
ev_vec[i],
xi_vec[i]
);
);
}
break;
case 2:
......@@ -920,7 +969,7 @@ void ScattererConfiguration::write_formatted(string file_name) {
pu_vec[i],
ev_vec[i],
xi_vec[i]
);
);
}
break;
case 3:
......@@ -940,7 +989,7 @@ void ScattererConfiguration::write_formatted(string file_name) {
wl_vec[i],
ev_vec[i],
xi_vec[i]
);
);
}
break;
case 4:
......@@ -960,7 +1009,7 @@ void ScattererConfiguration::write_formatted(string file_name) {
wl_vec[i],
pu_vec[i],
xi_vec[i]
);
);
}
break;
default:
......@@ -1016,3 +1065,37 @@ void ScattererConfiguration::write_formatted(string file_name) {
}
fclose(output);
}
bool ScattererConfiguration::operator ==(ScattererConfiguration &other) {
if (reference_variable_name.compare(other.reference_variable_name) != 0) return false;
if (number_of_spheres != other.number_of_spheres) return false;
if (number_of_scales != other.number_of_scales) return false;
if (idfc != other.idfc) return false;
if (exdc != other.exdc) return false;
if (wp != other.wp) return false;
if (xip != other.xip) return false;
if (use_external_sphere != other.use_external_sphere) return false;
for (int svi = 0; svi < number_of_scales; svi++)
if (scale_vec[svi] != other.scale_vec[svi]) return false;
int dj_index = 0;
for (int dj = 0; dj < number_of_spheres; dj++) {
bool check matrixes = false;
if (iog_vec[dj] >= dj + 1) {
dj_index = iog_vec[dj] - 1;
check_matrixes = true;
}
if (iog_vec[dj] != other.iog_vec[dj]) return false;
if (radii_of_spheres[dj_index] != other.radii_of_spheres[dj_index]) return false;
int layers = nshl_vec[dj_index];
if (layers != other.nshl_vec[dj_index]) return false;
if (check_matrixes) {
for (int di = 0; di < layers; di++) {
if (rcf[dj_index][di] != other.rcf[dj_index][di]) return false;
for (int dk = 0; dk < number_of_scales; dk++) {
if (dc0_matrix[di][dj_index][dk] != other.dc0_matrix[di][dj_index][dk]) return false;
} // dk loop
} // di loop
}
} // dj loop
return true;
}
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