fix clone script

cloneall.bash

 #!/bin/bash
 set -vex
 
-REPOS=(gitlab-profile core io integrate octree domain PM)
-SESSION_NAME=how
+REPOS=(${REPOS:=gitlab-profile core io integrate octree domain PM})
+: ${SESSION_NAME:=hw}
 
-while getopts "csapt" opt
+
+while getopts "cptlr:" opt
 do
    case "$opt" in
       c ) clona=1 ;;
-      s ) tmuxa=1 ;;
-      a ) attaccha=1 ;;
-      p ) installa=1 ;;
-      t ) testa=1 ;;
+      p ) pyinsta=1 ;;
+      t ) tmuxa=1 ;;
+      l ) linka=1 ;;
+      r ) shift $(( OPTIND - 2 )) && REPOS=($@) && break
    esac
 done
 
-if [ -z "$clona" ] && [ -z "$tmuxa" ] && [ -z "$attaccha" ];then
-    echo 'usage: ./cloneall.bash -c (clone repos) -p (pip install) -t (python tests) -s (create screen tmux session) -a (attach to tmux)'
+if [ -z "$clona" ] && [ -z "$pyinsta" ] && [ -z "$tmuxa" ] && [ -z "$linka" ];then
+    echo 'usage: ./cloneall.bash -c (clone repos) -p (python install and tests) -t (attach to tmux) -l (full tree of links) -r (repos)'
     exit 1
 fi
 
+for REPO in "${REPOS[@]}"; do
+    echo [ $REPO ]
+done
+#exit 0
+
 if [ ! -z "$clona" ]; then
     [[ ! -d "venv" ]] && python3 -mvenv venv
     . venv/bin/activate
@@ -33,19 +39,34 @@ if [ ! -z "$clona" ]; then
         pushd $REPO
         git switch dev || echo no dev branch
 	if [[ "$REPO" != "gitlab-profile" ]]; then
-	    [ ! -z "$installa" ] && python -mpip install -e .
-	    [ ! -z "$testa" ] && python -m hotwheels.checkup hotwheels/
+	    [ ! -z "$pyinsta" ] && python -mpip install -e . && python -m hotwheels.checkup hotwheels/
 	fi
         popd
     done
 fi
 
+if [ ! -z "$linka" ]; then
+    mkdir -p full/hotwheels
+    touch full/hotwheels/__init__.py || echo cant touch
+    for f in core/hotwheels/*; do
+	[[ "${f##*/:0:2}" == "__" ]] && continue
+	ln -sf $PWD/$f full/hotwheels/${f##*/}
+    done
+    for REPO in "${REPOS[@]}"; do
+	if [ "$REPO" != "core" ] && [ "$REPO" != "gitlab-profile" ]; then
+	    ln -sf $PWD/$REPO/hotwheels/$REPO full/hotwheels/$REPO
+	fi
+    done
+fi
+
 if [ ! -z "$tmuxa" ]; then
     
     if ! tmux has-session -t $SESSION_NAME ; then
 	# Create a new tmux session
 	tmux new-session -d -s $SESSION_NAME -c $PWD
 
+	[[ -d full ]] && REPOS+=(full)
+	
 	for index in "${!REPOS[@]}"; do
             value="${REPOS[index]}"
 	    
@@ -57,9 +78,6 @@ if [ ! -z "$tmuxa" ]; then
             tmux new-window -t $SESSION_NAME -c $PWD
 	done
     fi
-fi
-
-if [ ! -z "$attaccha" ]; then
     tmux attach-session -t $SESSION_NAME
 fi