serial/openmp jabobi for hpc_school

jacobi/openmp/not_opt/script/run_pleiadi.sh → jacobi/openmp/not_opt/script/run.sh

 #!/bin/bash
 
 ######################### RESOURSE ALLOCATION #####################################
-##SBATCH --account=????????
-
-#SBATCH --partition=pleiadi
+#SBATCH --account=hpc_school
+#SBATCH --partition=hpc_school
 #SBATCH --job-name="Jacobi"
 #SBATCH --nodes=1
 #SBATCH --ntasks-per-node=1
 #SBATCH --cpus-per-task=8
 #SBATCH --output=Jacobi-omp-no-opt-%j.out
 #SBATCH --error=Jacobi-omp-no-opt.%j.err
-#SBATCH --time=00:03:00
+#SBATCH --time=00:05:00
 ###################################################################################
 
 ################################## MODULES ########################################
@@ -43,8 +42,19 @@ then
     exit 2
 fi
 
+
+# OMP stuff
+export OMP_DISPLAY_AFFINITY=1
+export OMP_WAIT_POLICY=ACTIVE
+# export OMP_PLACES=( "cores", "threads" )
+# export BINDING=( "master" "close" "spread" )
+
 for OMP in ${OMP_THREADS[@]}
 do
+    # not necessary because the clause 'num_threads'
+    # is specified in the source code
+    # export OMP_NUM_THREADS=${OMP}
+
     # run the application
     time ${EXEC} ${GRID_SIZE_X} ${GRID_SIZE_Y} ${OMP} |& tee ${EXEC}_OMP_${OMP}_output.txt
 done

jacobi/serial/not_opt/script/run_pleiadi.sh → jacobi/serial/not_opt/script/run.sh

 #!/bin/bash
 
 ######################### RESOURSE ALLOCATION #####################################
-##SBATCH --account=????????
-
-#SBATCH --partition=pleiadi
+#SBATCH --account=hpc_school
+#SBATCH --partition=hpc_school
 #SBATCH --job-name="Jacobi"
 #SBATCH --nodes=1
-#SBATCH --ntasks-per-node=1
 #SBATCH --cpus-per-task=1
 #SBATCH --output=Jacobi-serial-no-opt-%j.out
 #SBATCH --error=Jacobi-serial-no-opt.%j.err
-#SBATCH --time=00:03:00
+#SBATCH --time=00:05:00
 ###################################################################################
 
 ################################## MODULES ########################################
@@ -21,6 +19,8 @@ source /opt/cluster/spack/share/spack/setup-env.sh
 module purge
 # load GCC
 module load default-gcc-11.2.0
+# load valgrind (optional)
+module load valgrind-3.18.1-gcc-11.2.0-3hcfkwk
 ###################################################################################
 
 # input parameters
@@ -50,55 +50,3 @@ time ${EXEC} ${GRID_SIZE_X} ${GRID_SIZE_Y} |& tee ${EXEC}_output.txt
 cd ${WORKDIR}
 
 exit 0
-
-# # return to ./script and source input parameters and function
-# cd - && source input_parameters && source write_paramfile.sh
-
-# # loop over particles
-# for PART in "${N[@]}"
-# do
-#     # loop over MPI tasks
-#     for TASK in "${MPI[@]}"
-#     do
-# 	# loop over OMP threads
-# 	for THR in "${THREADS[@]}"
-# 	do
-# 	    # write the paramfile
-# 	    write_paramfile ${TEMPLATE}      ${PARAMFILE}       \
-# 			    ${DELETE_OUTPUT_FILES} ${OUTPUTDIR} \
-# 			    ${THR} ${PART}
-
-# 	    # check the status
-# 	    if [[ "$?" != "0" ]]
-# 	    then
-# 		echo "Error while writing ${PARAMFILE} ...aborting..."
-# 		exit 3
-# 	    fi
-
-# 	    # move the paramfile and move to the parent directory where the executable resides
-# 	    mv ${PARAMFILE} ../ && cd ..
-	    
-# 	    # run the application
-# 	    srun --ntasks ${TASK} ${EXEC} ${PARAMFILE} >& $SLURM_JOB_ID.log
-
-# 	    # check exit status
-# 	    if [[ "$?" != "0" ]]
-# 	    then
-# 		echo "####################################################################"
-# 		echo "ERROR while running the app using: ${TASK} MPI tasks and ${GPU} GPUs"
-# 		echo "####################################################################"
-# 	    fi
-
-# 	    # delete the paramfile and return to the previous directory
-# 	    rm -f ${PARAMFILE} && cd -
-# 	done # loop over THR
-#     done # loop over TASKS
-# done # looop over particles
-
-# # make clean
-# cd .. && make clean
-
-
-
-# Everything is OK!
-# exit 0