Delete run_JUWELS.sh

jacobi/serial/not_opt/script/run_JUWELS.sh

-#!/bin/bash -x
-
-######################### RESOURSE ALLOCATION #####################################
-# ACCOUNT         = prpb93
-# NODES           = 2                (2 nodes)
-# PARTITION       = batch            (use Cluster Module)
-# ERROR           = Nbody-err.%j     (error handle)
-# TIME            = 00:15:00         (enough for tests)
-# EXCLUSIVE       = node should not be shared with other jobs
-
-#SBATCH --account=prpb93
-#SBATCH --nodes=1
-#SBATCH --partition=batch
-#SBATCH --error=Nbody-err.%j
-#SBATCH --time=00:03:00
-#SBATCH --job-name="Nbody"
-#SBATCH --exclusive
-###################################################################################
-
-################################## MODULES ########################################
-# module purge
-module purge
-# load GCC
-module load GCC/9.3.0
-# load OpenMPI
-module load OpenMPI
-###################################################################################
-
-# compile the application
-# select flags inside the Makefile (parent directory)
-cd .. && make mpi_omp_step_profiling -f Makefile
-
-if [[ "$?" != "0" ]]
-then
-    echo "Cannot compile the application ...aborting..."
-    exit 1
-fi
-
-# the executable
-EXEC=$(find . -name *$(hostname)* -executable -type f)
-if [[ "$?" != "0" ]]
-then
-    echo "Cannot find the executable ...aborting..."
-    exit 2
-fi
-
-# return to ./script and source input parameters and function
-cd - && source input_parameters && source write_paramfile.sh
-
-# loop over particles
-for PART in "${N[@]}"
-do
-    # loop over MPI tasks
-    for TASK in "${MPI[@]}"
-    do
-	# loop over OMP threads
-	for THR in "${THREADS[@]}"
-	do
-	    # write the paramfile
-	    write_paramfile ${TEMPLATE}      ${PARAMFILE}       \
-			    ${DELETE_OUTPUT_FILES} ${OUTPUTDIR} \
-			    ${THR} ${PART}
-
-	    # check the status
-	    if [[ "$?" != "0" ]]
-	    then
-		echo "Error while writing ${PARAMFILE} ...aborting..."
-		exit 3
-	    fi
-
-	    # move the paramfile and move to the parent directory where the executable resides
-	    mv ${PARAMFILE} ../ && cd ..
-	    
-	    # run the application
-	    srun --ntasks ${TASK} ${EXEC} ${PARAMFILE} >& $SLURM_JOB_ID.log
-
-	    # check exit status
-	    if [[ "$?" != "0" ]]
-	    then
-		echo "####################################################################"
-		echo "ERROR while running the app using: ${TASK} MPI tasks and ${GPU} GPUs"
-		echo "####################################################################"
-	    fi
-
-	    # delete the paramfile and return to the previous directory
-	    rm -f ${PARAMFILE} && cd -
-	done # loop over THR
-    done # loop over TASKS
-done # looop over particles
-
-# make clean
-cd .. && make clean
-
-# Everything is OK!
-exit 0