[TAP] Adapt the JUnit class testing getFile(...),

apply a quick space replacement (by %20) for few URIs of the configuration file
and remove duplicated entry (encoding) from the Gradle build script.

A special test has also been added in getFile(...) in order to deliver
a clear error message for users using a former version with URIs in their
configuration file (only for file_root_path and metadata_file).