Realign binary_IO with cleaner building process

Conflicts:
src/cluster/Makefile
src/sphere/Makefile

Containers

See merge request giacomo.mulas/np_tmcode!17

Implement the container images and documentation at the level of M7.00 release

- all objects now go in a dedicated dir
- to avoid error-prone repetitions, objects are put in env variables
- correct target mismatches that caused builds to be repeated even when not necessary

create new Dockerfile to create docker images both for the pipeline runner and...

See merge request giacomo.mulas/np_tmcode!15

- rename edfb to differentiate the one using sphere input files from the one using cluster input files
- update README.md files to reflect edfb renaming
- update Dockerfile and np-tmcode-run.def to include hdf5-tools in the images
- update make.inc to omit profiling options from the M7.00 release