UWSToolBox).

_ See GitHub Issue #100 _

file (actually, replaces the real backup file by the temporary one).

Sometimes a temporary backup file (i.e. a file named like `*.backup.temp-*`) is
not deleted. This means that the log rotation fails and that, potentially, some
jobs have not been updated/deleted. This commit is there is re-enforce the
replacement operation.

The property `upload_default_db_limit` has been deprecated. Indeed, in the
current state of the TAP protocol, this makes no sense: the user can not change
the limit size (in bytes or rows) for uploaded tables.

The property `upload_max_file_size` has been deprecated. It is actually
duplicated: `upload_max_db_limit`, if expressed in bytes already lets put a
limit on the maximum size of an uploaded table/file.

The property `upload_max_request_size` has been added. It lets set a maximum
size for a whole HTTP Multipart Request. By default it is set to 250MB.

The default value of `upload_max_db_size` is now 1 million rows.

The UPLOAD feature is still disabled by default (i.e. `upload_enabled=false`).

This bug occurred "just" due to an un-desired inverted test, since UWS-1.1 is
implemented (UWSLib-4.3 and TAPLib-2.2).

Thus, the UPLOAD management is much more stable and relies on a well documented
and maintained library (but at the cost of the additionnal size of the final
JAR). The most important point is the capability to efficiently limit the size
of the incoming file and on the disk/memory management when uploading the
file(s) and in case of error during this process (i.e. files must be deleted).

attribute.

In this way, it is possible to run two different instances of a UWS/TAP service
with a different temporary directory in the same JVM.

The attribute `version` in the node `job` is never restored ; it is just
informative. Thus, it is now silently ignored.

The attribute `length` of an upload was badly spelled.

The attribute `mime-type` of a result was backuped as `mime-type` but restored
as `mime`. Hence the absence of this piece of information when restoring a job.

_This latter will soon be removed from UWSLib._

(possibly NULL) was used instead of the class variable (which is NEVER NULL).

passed by reference.

Then, UWS or TAP implementors are free to use whatever logging system they want
(e.g. log4j, logback, ...).

This error occurred generally during the backup process while trying to
backup the job list of a specific user. If several of his jobs were running
and changing state during the backup process, this
ConcurrentModificationException was thrown. This generally happens when the same
user submits a lot of shorts jobs in the same time.

This exception was due to a non thread-safe usage of
UWSParameters.additionalParams. To fix this issue, instead of creating it as a
normal HashMap, it is now created as a ConcurrentHashMap.

The same modification has also been applied to UWSParameters.params. In addition
of the replacement of HashMap into ConcurrentHashMap, all `synchronized` blocks
have been removed....there should not be needed any more.

When enabled, it was generating a file each minute on the day before the
specified day of week.

For instance: if the log rotation frequency was `W 1 0 0` (so, weekly on Sunday
at 00:00). The rotation was performed on Saturday midnight. But, because of a
bad index correction, the rotation kept going on the whole day of Saturday.
Since the rotated file is suffixed by the timestamp with hours and minutes
(no seconds), it actually generated a new log file for each minute of the
saturday. Of course, each time the file contained only one line (or 2 with some
luck)...which is pretty useless.

backup file.

The previous commit was only applied on the whole backup file.

Instead of writing the new backup content in the final backup file directly,
write it first in a temporary file and then change the files name.

This fix prevents incomplete backup files (particularly in case of one backup
file per user) when stopping/restarting by force.

When a custom key was encountered, the library tried to fetch its value as a
String...but it is not always a String. Instead, now it is fetch as an Object
(possibly a JSONObject or JSONArray).

The UWS-1.x standard defines the quote as an ISO-8601 date. UWS-Lib stores it
as a number of seconds (i.e. estimated job duration).

This fix ensures that this integer/long quote value is returned as a date.

Note: The backup and restoration processes are not affected by this change.
      The backup file format is still the same: a quote stored as a long value.

It is possible to choose how the blocking mechanism should behave
(e.g. what the max. waiting period, how many requests can be blocked
in the same time, what happen when the blocking times out, ...).

Indeed, the policy to apply must actually be an extension of the interface
BlockingPolicy. Already two implementations are provided in the library
(LimitedBlockingPolicy and UserLimitedBlockingPolicy), but a custom policy
can perfectly be created and apply to a UWS service.

By default, no policy is set. In such case, the service will block the time
specified by the user, which may be -1 (i.e. wait indefinitely). A
BlockingPolicy can help controlling the waiting/blocking process and protect
the resources of the server.

- PHASE: list only jobs in the specified PHASE. If this parameter is repeated
         jobs matching any of the specified phases will be returned.
- AFTER: list jobs created after the specified ISO-8601 date (included).
         If this parameter is repeated, only the most recent date is retained.
- LAST: list the N-th most recently created jobs, ordered by descending
        creation time

These filter parameters are additive: their constraints are joint as with an
AND operator (except for PHASE parameters ; see above).

If no filter is specified, all jobs EXCEPT the ARCHIVED ones are listed. The
only way to list ARCHIVED jobs is to use PHASE=ARCHIVED (with or without other
filter parameters).

The filtering API has been made in a generic manner so that it is easily
possible to create and add new filters. See the interface JobFilter and the
class JobListRefined for more details.

and ALWAYS_ARCHIVE.

When archiving a job, its former phase is stored in jobInfo under the name
'oldPhase' if no jobInfo is already set.

Archiving a job means that all input files and results are destroyed ; the
error summary and jobInfo (even if it is a file) are kept.

Each archive operation ends with a log message ; in ERROR if failed or in
INFO if successful.

This commit also includes the following things:

    - reformat on 80 characters width the Javadoc of all modified classes

	- fix a bug with the phase transitions: since it is not possible any more
	  to go from PENDING to EXECUTING directly, UWSJob.start(...) must first
	  ensure to be on QUEUED phase. This bug has also been fixed in TAPJob.
	  Similarly, before going into ARCHIVED phase the job must be set into
	  ABORTED phase if not already in a final phase.

A JUnit test case has been added in order to check that all possible phase
transitions are respecting the UWS-1.1 standard. However, there is anyway
a bit more freedom for some of them:

    - it is possible to go to and come from UNKNOWN at any time, whatever is
	  the source or target phase.

	- it is possible to go to ERROR or ABORTED from the phases HELD and
	  SUSPENDED. This fact was not specified in the State Machine figure of the
	  UWS standard but the following sentence at section
	  "2.1.3 Execution Phase" (page 7) should allow that:
	  "At any time before the COMPLETED phase a job may either be ABORTED or
	   may suffer an ERROR."

	- the UWS-1.1 document has an inconsistency about the HELD phase. At
	  section "2.1.3 Execution Phase" (page 7), the following sentence implies
	  that it is only possible to go to HELD from PENDING (because it would not
	  be possible to queue the job). And so, when PHASE=RUN is sent by the UWS
      client, if now possible, the job should go in phase QUEUED. However the
	  State Machine figure suggests that it is possible to go to HELD only from
	  EXECUTING and that a PHASE=RUN would make the job go back to EXECUTING (if
	  now possible). Because of this inconsistency, the UWSLibrary made possible
	  the following transitions: PENDING/EXECUTING->HELD->QUEUED/EXECUTING.

(note: a figure illustrating the phase transitions supported by the
       UWSLibrary-4.3 has been created in the directory `img` of the
	   UWS-Tutorial website under the file name `state_machine.png`...which of
	   course will be visible only when uwslib-4.3 will be released)

Besides, this commit also include almost a full rewriting of the Javadoc of
JobPhase and ExecutionPhase. The Javadoc of UWSJob has just been reformated
so that comments do not exceed 80 (+2) characters. This reformating aims to
improve the human reading of the Javadoc while looking at the source files ;
however this should not affect much the HTML version of the Javadoc.

This property is displayed in the XML and JSON serialization of a job item.
It is also backuped and restored from a UWS backup file.

/!\ WARNING: Small modification of the API! Since creationTime must be
             set by the UWS service at creation of a job, this date must also
             be imported at backup restoration. Hence the modification of the
             interface uws.service.UWSFactory and its implementations
             (particularly tap.AbstractTAPFactory). Similarly the class
             uws.job.UWSJob and tap.job.TAPJob have underwent exactly the same
             modification in one of their constructors.

This commit also adds the new optional jobRef items: creationTime, runID and
ownerID in the XML and JSON serializations.

<job>.

This commit also:

    - set the version of the UWS protocol to 1.1 (cf UWS.VERSION)
	- add a static constant for the standardID (cf UWS.STANDARD_ID)
	- add a xlink:type and xlink:href for jobListRef in the uws XML
	- set the @version Javadoc attribute of all modified classes to 4.3
	  (scheduled version of the UWSLibrary supporting UWS-1.1)

serialization of all results if such information are available.

This commit also fix few comments about the result's XML serialization.

The processing of xlink:type of a result reference is made similar as the one of
jobRef.

This commit also includes the 2 following points:

    - for (really really tiny) optimisation purpose, replace String by a
	  char when there is only one character to append to a StringBuffer

	- add a bit more details about Result.type in the Javadoc (it should be
	  a xlink:type and not a random custom type)

Until now, it was possible to destroy the job by posting ACTION=DELETE
with a URL like below:

    {root-uws}/{job-list}/{job-id}/foo/bar

That is completely wrong. The correct URL for this action must always be:

    {root-uws}/{job-list}/{job-id}

This commit fixes this error in UWSServlet and UWSService.

The configuration of the DestructionTimeController was never effective
in the UWSServlet with a configuration file: the wrong instance was set.

synchronized although the collection of observers is synchronized (Vector) ;
using an Iterator ensures the synchronization and avoids concurrency problems.

  - uws.service.UWS.VERSION  (static final)
  - tap.resource.TAP.VERSION (static final)

Dealing with several protocol versions in the same time is quite difficult and
may significantly alter the libraries API in an unstable way. That's why, for
the TAP and UWS libraries, only one version is implemented (i.e. the last one).
To use a older version of the protocol, one must use an older version of the
corresponding library.

About the versioning of the ADQL standard, there is no need to set any version
number somewhere because a different ADQL version implies a different grammar.
It means that a different parser is required for each ADQL version. For the
moment, there is only one version, so no need to change anything to the ADQL
library about ADQL version. Later, ADQLParser should become an interface and
a factory will have to be used in order to get the parser corresponding to the
desired ADQL version.

This commit resolves partially the issue #28

Ideally, there should be an implementation of UWSLog and TAPLog working with
Log4j and another for SLF4J (and eventually for other logging mechanism).
Additionally, an implementation storing log messages in database would be
interesting. All these ideas may be implemented in UWSLib and TAPLib in a
future version.

_This commit aims to fix the issue #47_

and HashMap more generic by returning resp. a List and Map instead.

Additionally when an XML document is submitted in an HTTP POST request
(i.e. with the Content-Type = (text|application)/(.+-)?xml), this is
immediately set as a jobInfo in the created job.